Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs34379626 chr14:74640972 A/G 0.000221 176 25.28 26.57 10.57 KM Plot
PCPG rs34382843 chr13:37543479 G/GTC 0.000366 174 4.17 24.17 25.87 KM Plot
PCPG rs34409294 chr17:50290356 A/G 6.66E-5 177 25.77 27.95 14.47 KM Plot
PCPG rs34413179 chr12:31790828 A/G 0.000345 175 24.6 28.3 16.83 KM Plot
PCPG rs34420680 chr16:89809171 C/T 0.000191 173 26.22 20.2 36.37 KM Plot
PCPG rs34421862 chr14:74307623 T/G 4.2E-6 175 25.47 27.2 10.43 KM Plot
PCPG rs34423852 chr2:242561703 A/C 3.52E-5 173 25.2 25.67 20.28 KM Plot
PCPG rs34433766 chr14:74305307 T/G 4.2E-6 175 25.47 27.2 10.43 KM Plot
PCPG rs34434571 chr3:150883777 A/AT 0.000417 173 24.85 29.43 60.03 KM Plot
PCPG rs34436589 chr21:38496374 TA/T 1.11E-16 174 24.7 25.63 3.17 KM Plot
PCPG rs34440436 chr14:74485133 C/T 3.72E-7 178 25.28 28.38 7.4 KM Plot
PCPG rs34441975 chr2:242584876 T/A 7.68E-11 174 25.77 24.7 10.3 KM Plot
PCPG rs34445440 chr17:74668773 CTG/C 1.3E-6 171 25.53 24.23 10.28 KM Plot
PCPG rs34449944 chr2:242546309 C/A 4.87E-11 177 25.87 24.07 10.3 KM Plot
PCPG rs34474101 chr15:43187460 A/G 2.58E-14 175 25.87 24.62 3.17 KM Plot